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Substituted Cyclohexanes – Axial vs Equatorial
Last updated: December 6th, 2024 |
Equatorial vs Axial Groups: Why The Equatorial Position Is Of Lower Energy
Just to bring you up to speed, let’s quickly review the last post. And at the bottom, I’ll also correct a little fib I made in the last article.
Table Of Contents
- Brief Review On The Cyclohexane Chair Conformation
- In 1-Methylcyclohexane, The Ratio Of Equatorial Methyl Conformer To Axial Methyl Conformer Is About 95:5
- The “Equatorial Methyl” Conformation Encounters Fewer Gauche Interactions Than The “Axial Methyl” Conformation
- The Experimentally Determined Equilibrium Ratio Of Conformers Can Be Used to Calculate The Energy Difference
- Summary: Axial Vs Equatorial Groups
- Notes
- (Advanced) References and Further Reading
1. Brief Review On The Cyclohexane Chair Conformation
- Cyclohexane Undergoes A Conformational Interconversion Known As A Chair Flip. In this chair flip, all axial groups become equatorial, and all equatorial groups become axial. [but all “up” groups remain up, and all “down” groups remain down].
- The two chair forms of cyclohexane itself are completely indistinguishable, but this is not true in most cases. For example, in 1-methylcyclohexane, one chair conformer has an axial methyl group, and in the other the methyl group is equatorial. These are conformational isomers, or simply, “conformers”.
- At room temperature, these two conformations are in rapid equilibrium with each other. There is an activation barrier of about 10 kcal/mol for this interconversion, since the high-energy “half-chair” conformer is an intermediate in this process. Trying to observe both conformations of 1-methylcyclohexane at room temperature with a device for taking “molecular snapshots” (an NMR spectrometer is what we use – more precise details on this in future posts) results in a blurred picture. Like an old camera trying to take pictures of spokes on a moving bicycle wheel, the “shutter speed” is too slow, and the result is that the images blend together to give an average. Using this device, it’s simply not possible to see both cyclohexane conformers of 1-methylcyclohexane at room temperature.
- At very low temperatures (about 80 degrees above absolute zero) equilibrium between the two chair forms stops, because there isn’t enough thermal energy available to ascend the activation barrier of 10 kcal/mol. Now, when we try to take “molecular snapshots” of 1-methylcyclohexane, we do indeed see the two conformations separately. [Note 1]
Now, the correction to the fib.
In the last post, we assumed that these two conformations would be equal in energy, and therefore we would see a 50:50 mixture of the two conformations.
Is this true? No.
2. In 1-Methylcyclohexane, The Ratio of the Equatorial Methyl Conformer to the Axial Methyl Conformer Is 95:5 .
There’s only one way to find out. Do the experiment with a substituted cyclohexane such as 1-methylcyclohexane.
When we do this, here’s what we find. Instead of being equal, the ratio of “equatorial methyl” to “axial methyl” conformers is about 95:5 favouring the conformation where the methyl group is equatorial. [Note 2]
Very interesting! This must mean that the equatorial conformation is of lower energy than the “axial” conformation.
Why might that be?
3. The “Equatorial” Methyl Conformation Encounters Fewer Gauche Interactions Than the Axial Methyl Conformation
Let’s look at the Newman projection of the chair. Imagine looking along the C-1 to C-2 bond (which is coplanar with the C-4 to C-5 bond). Here’s what you’d see.
Note that in the conformation where methyl is axial, there is a gauche interaction between the axial methyl group and C-3. This is absent in the conformation where methyl is equatorial. This gauche interaction is an example of van der Waals strain, which is what makes the axial conformer higher in energy.
There is actually a second gauche interaction if you look along C-1 to C-6 . This gauche interaction is with C-5.
A simple way to keep track is to think of it as the methyl group interacting with the other ‘axial’ hydrogens, at C-3 and C-5. These are called “diaxial interactions” since they are steric interactions between axial substituents.
Bottom line: in two unequal conformations of a cyclohexane ring, the conformation where steric interactions are minimized will be favoured. [Note 2]
4. The Experimentally Determined Equilibrium Ratio Of Conformers Can Be Used To Calculate The Energy Difference
Now here’s a neat consequence of this knowledge. Since this ratio of conformers (95:5) represents a system at equilibrium, we can actually use it to calculate the difference in energy of these two conformers using the following equation:
For a 50:50 mixture (K = 1) the energy difference ΔG would be zero.
For methylcyclohexane at room temperature (298 K) the 95:5 ratio of equatorial to axial conformers translates to an energy difference of 1.74 kcal/mol.
In other words, the equatorial conformer is more stable by 1.74 kcal/mol.
Since there are two gauche interactions, and the strain energy is 1.74 kcal/mol, it’s easy to calculate the value of each interaction: 0.87 kcal/mol .
5. Summary: Axial Vs Equatorial Groups
Now this opens up all kinds of questions. If a methyl group (CH3) leads to an energy difference of 1.70 kcal/mol, then what effect would an ethyl group (CH2CH3) have? Or a Cl? Or OH ? Or tert-butyl ?
We can use the same approach to measure all of these numbers. More about that in the next post.
Next Post: Substituted Cyclohexanes: A-Values
Notes
Related Articles
- Ranking The Bulkiness Of Substituents On Cyclohexanes: “A-Values”
- Cyclohexane Chair Conformation Stability: Which One Is Lower Energy?
- Fused Rings – Cis-Decalin and Trans-Decalin
- Naming Bicyclic Compounds – Fused, Bridged, and Spiro
- Bredt’s Rule (And Summary of Cycloalkanes)
- Cycloalkanes Practice Problems (MOC Membership)
Note 1. This is a bit of a cheat. In the equation ΔG = –RT ln K , the value of K is related to T, so the equilibrium ratio at –80 °C will be a bit different than the value at room temperature. However, one can then solve for ΔG and use this number to calculate what K is at room temperature.
Note 2. Enterprising students might ask what happens if the axial hydrogens on C-3 and C-5 are removed. Would this change the equilibrium? Absolutely!
In the molecule above, the CH2 groups at C-3 and C-5 have been replaced by oxygen. Since there are no longer any significant diaxial interactions between the methyl group and substitutents on the ring, there is no significant energy difference between the equatorial and axial conformations of this molecule.
(Advanced) References and Further Reading
This is a topic commonly taught to undergraduates in Organic Chemistry, and goes along with the discussion on A-values. Substituents in cyclohexane can take two positions, axial and equatorial, and the preferred conformation is dictated by stereoelectronic effects.
- Electron Diffraction Investigations of Molecular Structures. II. Results Obtained by the Rotating Sector Method.
Hassel, O.; Viervoll, H.
Acta Chem. Scand. 1947, 1, 149-168
DOI: 3891/acta.chem.scand.01-0149 - The Structure of Molecules Containing Cyclohexane or Pyranose Rings.
Hassel, O.; Ottar, B.
Acta Chem. Scand. 1947, 1, 929-943
DOI: 3891/acta.chem.scand.01-0929
Odd Hassel first confirmed that cyclohexane exists in the now commonly accepted chair confirmation. He also proposed that substituents can take two different types of positions on the ring, which he called c- and e-bonds. He also showed that the conformational analysis of cyclohexanes can be extended to other unsaturated 6-membered rings, such as the pyranoses commonly found in carbohydrates. Odd Hassel later shared the Nobel Prize in Chemistry with Prof. D. H. R. Barton for his work on conformational analysis. - The Thermodynamic Properties and Molecular Structure of Cyclohexane, Methylcyclohexane, Ethylcyclohexane and the Seven Dimethylcyclohexanes
Charles W. Beckett, Kenneth S. Pitzer, and Ralph Spitzer
Journal of the American Chemical Society 1947, 69 (10), 2488-2495
DOI: 1021/ja01202a070
This paper first proposes the terms ‘polar’ and ‘equatorial’ for the two types of positions substituents can take in cyclohexane. - Nomenclature of cycloHexane Bonds
BARTON, D., HASSEL, O., PITZER, K., PRELOG, V.
Nature 1953, 172, 1096–1097
DOI: 1038/1721096b0 - Nomenclature of Cyclohexane Bonds
H. R. Barton, O. Hassel, K. S. Pitzer, V. Prelog
Science 1954, 119, 49
DOI: 10.1126/science.119.3079.49
These are the first instances of the terms ‘axial’ and ‘equatorial’ being used to denote the two positions substituents can take in cyclohexane. This was also back in the day when scientists could safely cross-publish to get better visibility – pretty much the same article is published in both Science and Nature, considered top journals. - Neighboring Carbon and Hydrogen. XIX. t-Butylcyclohexyl Derivatives. Quantitative Conformational Analysis
S. Winstein and N. J. Holness
Journal of the American Chemical Society 1955, 77 (21), 5562-5578
DOI: 10.1021/ja01626a037
This is the paper that first introduced the concept of A-values (see Table XII) and how to determine them through kinetic (solvolytic) measurements, which is what Prof. Winstein was well known for. The introduction features a summary of how A-values are determined, and later on, Prof. Winstein states “The energy quantity by which a t-butyl group favors the equatorial position is sufficiently large to guarantee conformational homogeneity to most 4-t-butylcyclohexyl derivatives”, which is commonly taught in organic chemistry classes today. - STUDIES OF RATES OF CONVERSION AND POPULATIONS OF VARIOUS CONFORMATIONS OF SATURATED RING COMPOUNDS BY N.M.R.: I. CHLOROCYCLOHEXANE AND BROMOCYCLOHEXANE
W. Reeves, K. O. Strømme
Canadian Journal of Chemistry, 1960, 38 (8): 1241-1248
DOI: 10.1139/v60-176
This might be the first paper to actually use NMR to determine axial:equatorial ratios of substituted cyclohexanes. However, the authors do not explicitly calculate A-values here, which is why this paper is less well-known compared to the JACS publication of Jensen, Bushweller, and Beck below. - Conformational Analysis‐The Fundamental Contributions of D. H. R. Barton and O. Hassel
Topics in Stereochemistry 1967, 1, 1-17
DOI: 10.1002/9780470147153.ch1
A summary of the key papers that Profs. Barton and Hassel published in confirmation analysis, earning them the Nobel Prize in Chemistry in 1969. - Conformational preferences in monosubstituted cyclohexanes determined by nuclear magnetic resonance spectroscopy
Frederick R. Jensen, C. Hackett Bushweller, and Barbara H. Beck
Journal of the American Chemical Society 1969, 91 (2), 344-351
DOI: 10.1021/ja01030a023
This is the first paper to actually determine A-values through NMR, by measuring the equatorial:axial ratio of various monosubstituted cyclohexanes. - The experimental determination of the conformational free energy, enthalpy, and entropy differences for alkyl groups in alkylcyclohexanes by low temperature carbon-13 magnetic resonance spectroscopy
Harold Booth and Jeremy R. Everett
J. Chem. Soc., Perkin Trans. 2, 1980, 255-259
DOI: 10.1039/P29800000255
This paper covers the use of 13C NMR to determine the free energy differences between axial- and equatorial-subtituted alkylcyclohexanes (in essence, A-values).
00 General Chemistry Review
01 Bonding, Structure, and Resonance
- How Do We Know Methane (CH4) Is Tetrahedral?
- Hybrid Orbitals and Hybridization
- How To Determine Hybridization: A Shortcut
- Orbital Hybridization And Bond Strengths
- Sigma bonds come in six varieties: Pi bonds come in one
- A Key Skill: How to Calculate Formal Charge
- The Four Intermolecular Forces and How They Affect Boiling Points
- 3 Trends That Affect Boiling Points
- How To Use Electronegativity To Determine Electron Density (and why NOT to trust formal charge)
- Introduction to Resonance
- How To Use Curved Arrows To Interchange Resonance Forms
- Evaluating Resonance Forms (1) - The Rule of Least Charges
- How To Find The Best Resonance Structure By Applying Electronegativity
- Evaluating Resonance Structures With Negative Charges
- Evaluating Resonance Structures With Positive Charge
- Exploring Resonance: Pi-Donation
- Exploring Resonance: Pi-acceptors
- In Summary: Evaluating Resonance Structures
- Drawing Resonance Structures: 3 Common Mistakes To Avoid
- How to apply electronegativity and resonance to understand reactivity
- Bond Hybridization Practice
- Structure and Bonding Practice Quizzes
- Resonance Structures Practice
02 Acid Base Reactions
- Introduction to Acid-Base Reactions
- Acid Base Reactions In Organic Chemistry
- The Stronger The Acid, The Weaker The Conjugate Base
- Walkthrough of Acid-Base Reactions (3) - Acidity Trends
- Five Key Factors That Influence Acidity
- Acid-Base Reactions: Introducing Ka and pKa
- How to Use a pKa Table
- The pKa Table Is Your Friend
- A Handy Rule of Thumb for Acid-Base Reactions
- Acid Base Reactions Are Fast
- pKa Values Span 60 Orders Of Magnitude
- How Protonation and Deprotonation Affect Reactivity
- Acid Base Practice Problems
03 Alkanes and Nomenclature
- Meet the (Most Important) Functional Groups
- Condensed Formulas: Deciphering What the Brackets Mean
- Hidden Hydrogens, Hidden Lone Pairs, Hidden Counterions
- Don't Be Futyl, Learn The Butyls
- Primary, Secondary, Tertiary, Quaternary In Organic Chemistry
- Branching, and Its Affect On Melting and Boiling Points
- The Many, Many Ways of Drawing Butane
- Wedge And Dash Convention For Tetrahedral Carbon
- Common Mistakes in Organic Chemistry: Pentavalent Carbon
- Table of Functional Group Priorities for Nomenclature
- Summary Sheet - Alkane Nomenclature
- Organic Chemistry IUPAC Nomenclature Demystified With A Simple Puzzle Piece Approach
- Boiling Point Quizzes
- Organic Chemistry Nomenclature Quizzes
04 Conformations and Cycloalkanes
- Staggered vs Eclipsed Conformations of Ethane
- Conformational Isomers of Propane
- Newman Projection of Butane (and Gauche Conformation)
- Introduction to Cycloalkanes
- Geometric Isomers In Small Rings: Cis And Trans Cycloalkanes
- Calculation of Ring Strain In Cycloalkanes
- Cycloalkanes - Ring Strain In Cyclopropane And Cyclobutane
- Cyclohexane Conformations
- Cyclohexane Chair Conformation: An Aerial Tour
- How To Draw The Cyclohexane Chair Conformation
- The Cyclohexane Chair Flip
- The Cyclohexane Chair Flip - Energy Diagram
- Substituted Cyclohexanes - Axial vs Equatorial
- Ranking The Bulkiness Of Substituents On Cyclohexanes: "A-Values"
- Cyclohexane Chair Conformation Stability: Which One Is Lower Energy?
- Fused Rings - Cis-Decalin and Trans-Decalin
- Naming Bicyclic Compounds - Fused, Bridged, and Spiro
- Bredt's Rule (And Summary of Cycloalkanes)
- Newman Projection Practice
- Cycloalkanes Practice Problems
05 A Primer On Organic Reactions
- The Most Important Question To Ask When Learning a New Reaction
- Learning New Reactions: How Do The Electrons Move?
- The Third Most Important Question to Ask When Learning A New Reaction
- 7 Factors that stabilize negative charge in organic chemistry
- 7 Factors That Stabilize Positive Charge in Organic Chemistry
- Nucleophiles and Electrophiles
- Curved Arrows (for reactions)
- Curved Arrows (2): Initial Tails and Final Heads
- Nucleophilicity vs. Basicity
- The Three Classes of Nucleophiles
- What Makes A Good Nucleophile?
- What makes a good leaving group?
- 3 Factors That Stabilize Carbocations
- Equilibrium and Energy Relationships
- What's a Transition State?
- Hammond's Postulate
- Learning Organic Chemistry Reactions: A Checklist (PDF)
- Introduction to Free Radical Substitution Reactions
- Introduction to Oxidative Cleavage Reactions
06 Free Radical Reactions
- Bond Dissociation Energies = Homolytic Cleavage
- Free Radical Reactions
- 3 Factors That Stabilize Free Radicals
- What Factors Destabilize Free Radicals?
- Bond Strengths And Radical Stability
- Free Radical Initiation: Why Is "Light" Or "Heat" Required?
- Initiation, Propagation, Termination
- Monochlorination Products Of Propane, Pentane, And Other Alkanes
- Selectivity In Free Radical Reactions
- Selectivity in Free Radical Reactions: Bromination vs. Chlorination
- Halogenation At Tiffany's
- Allylic Bromination
- Bonus Topic: Allylic Rearrangements
- In Summary: Free Radicals
- Synthesis (2) - Reactions of Alkanes
- Free Radicals Practice Quizzes
07 Stereochemistry and Chirality
- Types of Isomers: Constitutional Isomers, Stereoisomers, Enantiomers, and Diastereomers
- How To Draw The Enantiomer Of A Chiral Molecule
- How To Draw A Bond Rotation
- Introduction to Assigning (R) and (S): The Cahn-Ingold-Prelog Rules
- Assigning Cahn-Ingold-Prelog (CIP) Priorities (2) - The Method of Dots
- Enantiomers vs Diastereomers vs The Same? Two Methods For Solving Problems
- Assigning R/S To Newman Projections (And Converting Newman To Line Diagrams)
- How To Determine R and S Configurations On A Fischer Projection
- The Meso Trap
- Optical Rotation, Optical Activity, and Specific Rotation
- Optical Purity and Enantiomeric Excess
- What's a Racemic Mixture?
- Chiral Allenes And Chiral Axes
- Stereochemistry Practice Problems and Quizzes
08 Substitution Reactions
- Nucleophilic Substitution Reactions - Introduction
- Two Types of Nucleophilic Substitution Reactions
- The SN2 Mechanism
- Why the SN2 Reaction Is Powerful
- The SN1 Mechanism
- The Conjugate Acid Is A Better Leaving Group
- Comparing the SN1 and SN2 Reactions
- Polar Protic? Polar Aprotic? Nonpolar? All About Solvents
- Steric Hindrance is Like a Fat Goalie
- Common Blind Spot: Intramolecular Reactions
- Substitution Practice - SN1
- Substitution Practice - SN2
09 Elimination Reactions
- Elimination Reactions (1): Introduction And The Key Pattern
- Elimination Reactions (2): The Zaitsev Rule
- Elimination Reactions Are Favored By Heat
- Two Elimination Reaction Patterns
- The E1 Reaction
- The E2 Mechanism
- E1 vs E2: Comparing the E1 and E2 Reactions
- Antiperiplanar Relationships: The E2 Reaction and Cyclohexane Rings
- Bulky Bases in Elimination Reactions
- Comparing the E1 vs SN1 Reactions
- Elimination (E1) Reactions With Rearrangements
- E1cB - Elimination (Unimolecular) Conjugate Base
- Elimination (E1) Practice Problems And Solutions
- Elimination (E2) Practice Problems and Solutions
10 Rearrangements
11 SN1/SN2/E1/E2 Decision
- Identifying Where Substitution and Elimination Reactions Happen
- Deciding SN1/SN2/E1/E2 (1) - The Substrate
- Deciding SN1/SN2/E1/E2 (2) - The Nucleophile/Base
- SN1 vs E1 and SN2 vs E2 : The Temperature
- Deciding SN1/SN2/E1/E2 - The Solvent
- Wrapup: The Key Factors For Determining SN1/SN2/E1/E2
- Alkyl Halide Reaction Map And Summary
- SN1 SN2 E1 E2 Practice Problems
12 Alkene Reactions
- E and Z Notation For Alkenes (+ Cis/Trans)
- Alkene Stability
- Alkene Addition Reactions: "Regioselectivity" and "Stereoselectivity" (Syn/Anti)
- Stereoselective and Stereospecific Reactions
- Hydrohalogenation of Alkenes and Markovnikov's Rule
- Hydration of Alkenes With Aqueous Acid
- Rearrangements in Alkene Addition Reactions
- Halogenation of Alkenes and Halohydrin Formation
- Oxymercuration Demercuration of Alkenes
- Hydroboration Oxidation of Alkenes
- m-CPBA (meta-chloroperoxybenzoic acid)
- OsO4 (Osmium Tetroxide) for Dihydroxylation of Alkenes
- Palladium on Carbon (Pd/C) for Catalytic Hydrogenation of Alkenes
- Cyclopropanation of Alkenes
- A Fourth Alkene Addition Pattern - Free Radical Addition
- Alkene Reactions: Ozonolysis
- Summary: Three Key Families Of Alkene Reaction Mechanisms
- Synthesis (4) - Alkene Reaction Map, Including Alkyl Halide Reactions
- Alkene Reactions Practice Problems
13 Alkyne Reactions
- Acetylides from Alkynes, And Substitution Reactions of Acetylides
- Partial Reduction of Alkynes With Lindlar's Catalyst
- Partial Reduction of Alkynes With Na/NH3 To Obtain Trans Alkenes
- Alkyne Hydroboration With "R2BH"
- Hydration and Oxymercuration of Alkynes
- Hydrohalogenation of Alkynes
- Alkyne Halogenation: Bromination, Chlorination, and Iodination of Alkynes
- Alkyne Reactions - The "Concerted" Pathway
- Alkenes To Alkynes Via Halogenation And Elimination Reactions
- Alkynes Are A Blank Canvas
- Synthesis (5) - Reactions of Alkynes
- Alkyne Reactions Practice Problems With Answers
14 Alcohols, Epoxides and Ethers
- Alcohols - Nomenclature and Properties
- Alcohols Can Act As Acids Or Bases (And Why It Matters)
- Alcohols - Acidity and Basicity
- The Williamson Ether Synthesis
- Ethers From Alkenes, Tertiary Alkyl Halides and Alkoxymercuration
- Alcohols To Ethers via Acid Catalysis
- Cleavage Of Ethers With Acid
- Epoxides - The Outlier Of The Ether Family
- Opening of Epoxides With Acid
- Epoxide Ring Opening With Base
- Making Alkyl Halides From Alcohols
- Tosylates And Mesylates
- PBr3 and SOCl2
- Elimination Reactions of Alcohols
- Elimination of Alcohols To Alkenes With POCl3
- Alcohol Oxidation: "Strong" and "Weak" Oxidants
- Demystifying The Mechanisms of Alcohol Oxidations
- Protecting Groups For Alcohols
- Thiols And Thioethers
- Calculating the oxidation state of a carbon
- Oxidation and Reduction in Organic Chemistry
- Oxidation Ladders
- SOCl2 Mechanism For Alcohols To Alkyl Halides: SN2 versus SNi
- Alcohol Reactions Roadmap (PDF)
- Alcohol Reaction Practice Problems
- Epoxide Reaction Quizzes
- Oxidation and Reduction Practice Quizzes
15 Organometallics
- What's An Organometallic?
- Formation of Grignard and Organolithium Reagents
- Organometallics Are Strong Bases
- Reactions of Grignard Reagents
- Protecting Groups In Grignard Reactions
- Synthesis Problems Involving Grignard Reagents
- Grignard Reactions And Synthesis (2)
- Organocuprates (Gilman Reagents): How They're Made
- Gilman Reagents (Organocuprates): What They're Used For
- The Heck, Suzuki, and Olefin Metathesis Reactions (And Why They Don't Belong In Most Introductory Organic Chemistry Courses)
- Reaction Map: Reactions of Organometallics
- Grignard Practice Problems
16 Spectroscopy
- Degrees of Unsaturation (or IHD, Index of Hydrogen Deficiency)
- Conjugation And Color (+ How Bleach Works)
- Introduction To UV-Vis Spectroscopy
- UV-Vis Spectroscopy: Absorbance of Carbonyls
- UV-Vis Spectroscopy: Practice Questions
- Bond Vibrations, Infrared Spectroscopy, and the "Ball and Spring" Model
- Infrared Spectroscopy: A Quick Primer On Interpreting Spectra
- IR Spectroscopy: 4 Practice Problems
- 1H NMR: How Many Signals?
- Homotopic, Enantiotopic, Diastereotopic
- Diastereotopic Protons in 1H NMR Spectroscopy: Examples
- C13 NMR - How Many Signals
- Liquid Gold: Pheromones In Doe Urine
- Natural Product Isolation (1) - Extraction
- Natural Product Isolation (2) - Purification Techniques, An Overview
- Structure Determination Case Study: Deer Tarsal Gland Pheromone
17 Dienes and MO Theory
- What To Expect In Organic Chemistry 2
- Are these molecules conjugated?
- Conjugation And Resonance In Organic Chemistry
- Bonding And Antibonding Pi Orbitals
- Molecular Orbitals of The Allyl Cation, Allyl Radical, and Allyl Anion
- Pi Molecular Orbitals of Butadiene
- Reactions of Dienes: 1,2 and 1,4 Addition
- Thermodynamic and Kinetic Products
- More On 1,2 and 1,4 Additions To Dienes
- s-cis and s-trans
- The Diels-Alder Reaction
- Cyclic Dienes and Dienophiles in the Diels-Alder Reaction
- Stereochemistry of the Diels-Alder Reaction
- Exo vs Endo Products In The Diels Alder: How To Tell Them Apart
- HOMO and LUMO In the Diels Alder Reaction
- Why Are Endo vs Exo Products Favored in the Diels-Alder Reaction?
- Diels-Alder Reaction: Kinetic and Thermodynamic Control
- The Retro Diels-Alder Reaction
- The Intramolecular Diels Alder Reaction
- Regiochemistry In The Diels-Alder Reaction
- The Cope and Claisen Rearrangements
- Electrocyclic Reactions
- Electrocyclic Ring Opening And Closure (2) - Six (or Eight) Pi Electrons
- Diels Alder Practice Problems
- Molecular Orbital Theory Practice
18 Aromaticity
- Introduction To Aromaticity
- Rules For Aromaticity
- Huckel's Rule: What Does 4n+2 Mean?
- Aromatic, Non-Aromatic, or Antiaromatic? Some Practice Problems
- Antiaromatic Compounds and Antiaromaticity
- The Pi Molecular Orbitals of Benzene
- The Pi Molecular Orbitals of Cyclobutadiene
- Frost Circles
- Aromaticity Practice Quizzes
19 Reactions of Aromatic Molecules
- Electrophilic Aromatic Substitution: Introduction
- Activating and Deactivating Groups In Electrophilic Aromatic Substitution
- Electrophilic Aromatic Substitution - The Mechanism
- Ortho-, Para- and Meta- Directors in Electrophilic Aromatic Substitution
- Understanding Ortho, Para, and Meta Directors
- Why are halogens ortho- para- directors?
- Disubstituted Benzenes: The Strongest Electron-Donor "Wins"
- Electrophilic Aromatic Substitutions (1) - Halogenation of Benzene
- Electrophilic Aromatic Substitutions (2) - Nitration and Sulfonation
- EAS Reactions (3) - Friedel-Crafts Acylation and Friedel-Crafts Alkylation
- Intramolecular Friedel-Crafts Reactions
- Nucleophilic Aromatic Substitution (NAS)
- Nucleophilic Aromatic Substitution (2) - The Benzyne Mechanism
- Reactions on the "Benzylic" Carbon: Bromination And Oxidation
- The Wolff-Kishner, Clemmensen, And Other Carbonyl Reductions
- More Reactions on the Aromatic Sidechain: Reduction of Nitro Groups and the Baeyer Villiger
- Aromatic Synthesis (1) - "Order Of Operations"
- Synthesis of Benzene Derivatives (2) - Polarity Reversal
- Aromatic Synthesis (3) - Sulfonyl Blocking Groups
- Birch Reduction
- Synthesis (7): Reaction Map of Benzene and Related Aromatic Compounds
- Aromatic Reactions and Synthesis Practice
- Electrophilic Aromatic Substitution Practice Problems
20 Aldehydes and Ketones
- What's The Alpha Carbon In Carbonyl Compounds?
- Nucleophilic Addition To Carbonyls
- Aldehydes and Ketones: 14 Reactions With The Same Mechanism
- Sodium Borohydride (NaBH4) Reduction of Aldehydes and Ketones
- Grignard Reagents For Addition To Aldehydes and Ketones
- Wittig Reaction
- Hydrates, Hemiacetals, and Acetals
- Imines - Properties, Formation, Reactions, and Mechanisms
- All About Enamines
- Breaking Down Carbonyl Reaction Mechanisms: Reactions of Anionic Nucleophiles (Part 2)
- Aldehydes Ketones Reaction Practice
21 Carboxylic Acid Derivatives
- Nucleophilic Acyl Substitution (With Negatively Charged Nucleophiles)
- Addition-Elimination Mechanisms With Neutral Nucleophiles (Including Acid Catalysis)
- Basic Hydrolysis of Esters - Saponification
- Transesterification
- Proton Transfer
- Fischer Esterification - Carboxylic Acid to Ester Under Acidic Conditions
- Lithium Aluminum Hydride (LiAlH4) For Reduction of Carboxylic Acid Derivatives
- LiAlH[Ot-Bu]3 For The Reduction of Acid Halides To Aldehydes
- Di-isobutyl Aluminum Hydride (DIBAL) For The Partial Reduction of Esters and Nitriles
- Amide Hydrolysis
- Thionyl Chloride (SOCl2)
- Diazomethane (CH2N2)
- Carbonyl Chemistry: Learn Six Mechanisms For the Price Of One
- Making Music With Mechanisms (PADPED)
- Carboxylic Acid Derivatives Practice Questions
22 Enols and Enolates
- Keto-Enol Tautomerism
- Enolates - Formation, Stability, and Simple Reactions
- Kinetic Versus Thermodynamic Enolates
- Aldol Addition and Condensation Reactions
- Reactions of Enols - Acid-Catalyzed Aldol, Halogenation, and Mannich Reactions
- Claisen Condensation and Dieckmann Condensation
- Decarboxylation
- The Malonic Ester and Acetoacetic Ester Synthesis
- The Michael Addition Reaction and Conjugate Addition
- The Robinson Annulation
- Haloform Reaction
- The Hell–Volhard–Zelinsky Reaction
- Enols and Enolates Practice Quizzes
23 Amines
- The Amide Functional Group: Properties, Synthesis, and Nomenclature
- Basicity of Amines And pKaH
- 5 Key Basicity Trends of Amines
- The Mesomeric Effect And Aromatic Amines
- Nucleophilicity of Amines
- Alkylation of Amines (Sucks!)
- Reductive Amination
- The Gabriel Synthesis
- Some Reactions of Azides
- The Hofmann Elimination
- The Hofmann and Curtius Rearrangements
- The Cope Elimination
- Protecting Groups for Amines - Carbamates
- The Strecker Synthesis of Amino Acids
- Introduction to Peptide Synthesis
- Reactions of Diazonium Salts: Sandmeyer and Related Reactions
- Amine Practice Questions
24 Carbohydrates
- D and L Notation For Sugars
- Pyranoses and Furanoses: Ring-Chain Tautomerism In Sugars
- What is Mutarotation?
- Reducing Sugars
- The Big Damn Post Of Carbohydrate-Related Chemistry Definitions
- The Haworth Projection
- Converting a Fischer Projection To A Haworth (And Vice Versa)
- Reactions of Sugars: Glycosylation and Protection
- The Ruff Degradation and Kiliani-Fischer Synthesis
- Isoelectric Points of Amino Acids (and How To Calculate Them)
- Carbohydrates Practice
- Amino Acid Quizzes
25 Fun and Miscellaneous
- A Gallery of Some Interesting Molecules From Nature
- Screw Organic Chemistry, I'm Just Going To Write About Cats
- On Cats, Part 1: Conformations and Configurations
- On Cats, Part 2: Cat Line Diagrams
- On Cats, Part 4: Enantiocats
- On Cats, Part 6: Stereocenters
- Organic Chemistry Is Shit
- The Organic Chemistry Behind "The Pill"
- Maybe they should call them, "Formal Wins" ?
- Why Do Organic Chemists Use Kilocalories?
- The Principle of Least Effort
- Organic Chemistry GIFS - Resonance Forms
- Reproducibility In Organic Chemistry
- What Holds The Nucleus Together?
- How Reactions Are Like Music
- Organic Chemistry and the New MCAT
26 Organic Chemistry Tips and Tricks
- Common Mistakes: Formal Charges Can Mislead
- Partial Charges Give Clues About Electron Flow
- Draw The Ugly Version First
- Organic Chemistry Study Tips: Learn the Trends
- The 8 Types of Arrows In Organic Chemistry, Explained
- Top 10 Skills To Master Before An Organic Chemistry 2 Final
- Common Mistakes with Carbonyls: Carboxylic Acids... Are Acids!
- Planning Organic Synthesis With "Reaction Maps"
- Alkene Addition Pattern #1: The "Carbocation Pathway"
- Alkene Addition Pattern #2: The "Three-Membered Ring" Pathway
- Alkene Addition Pattern #3: The "Concerted" Pathway
- Number Your Carbons!
- The 4 Major Classes of Reactions in Org 1
- How (and why) electrons flow
- Grossman's Rule
- Three Exam Tips
- A 3-Step Method For Thinking Through Synthesis Problems
- Putting It Together
- Putting Diels-Alder Products in Perspective
- The Ups and Downs of Cyclohexanes
- The Most Annoying Exceptions in Org 1 (Part 1)
- The Most Annoying Exceptions in Org 1 (Part 2)
- The Marriage May Be Bad, But the Divorce Still Costs Money
- 9 Nomenclature Conventions To Know
- Nucleophile attacks Electrophile
27 Case Studies of Successful O-Chem Students
- Success Stories: How Corina Got The The "Hard" Professor - And Got An A+ Anyway
- How Helena Aced Organic Chemistry
- From a "Drop" To B+ in Org 2 – How A Hard Working Student Turned It Around
- How Serge Aced Organic Chemistry
- Success Stories: How Zach Aced Organic Chemistry 1
- Success Stories: How Kari Went From C– to B+
- How Esther Bounced Back From a "C" To Get A's In Organic Chemistry 1 And 2
- How Tyrell Got The Highest Grade In Her Organic Chemistry Course
- This Is Why Students Use Flashcards
- Success Stories: How Stu Aced Organic Chemistry
- How John Pulled Up His Organic Chemistry Exam Grades
- Success Stories: How Nathan Aced Organic Chemistry (Without It Taking Over His Life)
- How Chris Aced Org 1 and Org 2
- Interview: How Jay Got an A+ In Organic Chemistry
- How to Do Well in Organic Chemistry: One Student's Advice
- "America's Top TA" Shares His Secrets For Teaching O-Chem
- "Organic Chemistry Is Like..." - A Few Metaphors
- How To Do Well In Organic Chemistry: Advice From A Tutor
- Guest post: "I went from being afraid of tests to actually looking forward to them".
When I look down the 1 to 2 carbon and 5 to 4 carbon for the axial position I am getting exactly the Newman projection you have, however, for the equatorial position Newman when I look down the 1 to 2 carbon and 4 to 5 carbon I am not getting the same Newman projection.I am getting two regular looking Y’s instead(with the methyl group in the northwest of the left Y) while you have upside down Y’s with the methyl group in the southwest of the leftmost Y.
Thank you It was really amazing to study organic chemistry from your site
In the note shouldn’t we consider the lone pairs of oxygen sir
Thank you sir for such a beautiful website I lost fear of organic just because of you
No, the lone pairs of oxygen do not exert any steric influence. Thank you for the kind words.
Dear sir,
I willbe very thankful if you kindly explain me the most stable conformation of the given molecule.
1-hydroxy 4 methyl 3,4 dioxane, Assuming both the methyl and Hydroxy group is faced towards the viewer.