Home / On Cats, Part 3: Newman Projections
On Cats, Part 3: Newman Projections
Last updated: March 27th, 2019 |
Do you know where the saying “there’s more than one way to skin a cat” comes from? Me neither. But I do know one thing: there is more than one way to draw cat conformations.
Last time I introduced the Cat Line Diagram and showed how we can use it to depict these 3-dimensional creatures on a 2-dimensional page. Another name for the Cat Line diagram is the “Line-Wedge” diagram since we use wedges to depict the parts that come out of the page, normal lines to depict the parts that are in the plane of the page, and dashes to show the parts that are pointing into the page.
Now it might strike you as rather arbitrary that I chose to do the drawing from the side. You are right. In fact, depending on your point of view, you can depict a 3-dimensional cat in several different ways.
Here is a picture of three different cats that are all in the same conformation. The only thing that is different between these conformations is the angle we’ve chosen to depict it.
If we depict it from above and a little to the side, we have what we can refer to as a Sawhorse projection. I call it the Sawhorse because, well, it resembles one. Note how the lines and the substituents (H=head, T=tail, F=foot) clearly show the orientation.
Now, an alternative way to depict conformations is the front-on view. Here, you’ll note that the spine (the “central axis”) is hidden, as we are viewing the conformation from the front. (Note: this is arbitrary – I could also have depicted the same picture from the back, but I’m not going to put up pictures of cat butts. That would be sick). Besides giving me an excuse to put even cuter pictures of cats on my blog, this depiction has some advantages, as we shall soon see. I call this the Newman projection since the cat in particular belongs to my neighbor Schlomo Newman, and he only allowed me to take pictures of it on the condition that I give him the intellectual property rights. I also had to buy him a kilo of very expensive hummus, but that’s another story.
The Newman projection is a particularly clever way to depict cat conformations, if I don’t say so myself. One of the main advantages is that it makes it very clear what the relative orientations of the feet, head, and tail in a given conformation are.
Here’s another example:
Let’s look at the two conformations side by side:
Note here the difference in the Newman projection of these two cats. The projection isn’t quite the same (one is from the front, and one is from the back) but they show a rotation about the central axis of 60 degrees. In the orientation on the left, each of the front feet are co-planar with the back feet, and the head is in the same plane as the tail. Since the parts on the front (the head and two feet) block out our view of the parts on the back (the tail and two feet) we can call this the eclipsed conformation.
Now look at the conformation on the right. Here (although the picture is not the best, I admit) the parts in the front do not obscure our view of the parts in the back. Since everything is offset at a 60 degree angle, why not call this the staggered conformation.
One of the cool things about the Newman is that it makes drawing rotations a snap. It gives us another theoretical cat model that we can manipulate on a page without having to do it on the real thing. Schlomo insisted that I not attempt any “funny stuff” with his cat which I took to mean not rotating it around any weird angles. So we’ll just have to do it on paper without the aid of a cat photo.
You can convert the eclipsed conformation to the staggered simply by keeping one half the same (the front part, in our example) and rotating the back half 60 degrees. This gives us the staggered conformation.
In my opinion this makes rotations a bit easier to visualize than with the cat line diagram. But it’s still a valuable skill to learn how to convert the two.
Now let’s get even more nerdy. If we take out a protractor we can actually measure some of the angles involved and start to gain a more qualitative understanding of the difference between these two orientations.
Let’s define an angle, the dihedral angle, as being the angle made by a substituent (i.e. head (H), tail (T), foot(F)) on the front half and one on the back half, as we gaze along the central axis (spine). We pick one substituent as a reference and then measure the angles from there. Let’s pick the head (H) as our reference here.
For instance in the eclipsed conformation above, the tail (T) and head (H) are in the same plane. They line up just like the minute and hour hands do at midnight: the dihedral angle here is 0°. Since they’re on the Same Side, let’s call that Syn. The next dihedral angles to examine in the eclipsed conformation are the ones between the head and the two feet: they are +120° and -120° respectively.
Now let’s look at the staggered conformation. Here, the angle between the head and tail is 60 degrees clockwise (+60°). Since this is a little off-kilter, kind of like wearing a chartreuse blouse with a pink skirt, let’s give it a weird, tacky and nonsensical name – like “gauche”. The orientation between the head and foot here is –60° (or +240° if you like). This is also “gauche”. Finally, let’s look at the head (H) and the other foot (F) here; they have a dihedral angle of 180°. Since they’re on opposite sides, I might want to call them just “opposite” but let’s continue with some esoteric terminology and call this conformation “anti”.
So with this terminology we can start to give names to many of the weird conformations you’ll see cats adopt. We can use either wedge-line, sawhorse, or Newman projections to show cat conformations and each of these names applies, no matter how we draw them. Like this.
Final test for your cat terminology: application. Try this the next time you are at home.
Roommate: Dude what is up with your cat?
You: Ginger is clearly hungry. She’s in the eclipsed conformation and her head and tail are syn-periplanar.
00 General Chemistry Review
- Gen Chem and Organic Chem: How are they different?
- How Gen Chem Relates to Organic Chem, Pt. 1 - The Atom
- From Gen Chem to Organic Chem, Pt. 2 - Electrons and Orbitals
- From Gen Chem to Organic Chem, Pt. 3 - Effective Nuclear Charge
- From Gen Chem to Organic Chem, Pt. 4 - Chemical Bonding
- From Gen Chem to Organic Chem, Pt. 5 - Understanding Periodic Trends
- From Gen Chem to Org Chem, Pt. 6 - Lewis Structures, A Parable
- From Gen Chem to Org Chem, Pt. 7 - Lewis Structures
- From Gen Chem to Org Chem, Pt. 8 - Ionic and Covalent Bonding
- From Gen Chem to Org Chem, Pt. 9 - Acids and Bases
- From Gen Chem to Organic Chem, Pt. 10 - Hess' Law
- From Gen Chem to Organic Chem, Pt. 11 - The Second Law
- From Gen Chem to Org Chem Pt. 12 - Kinetics
- From Gen Chem to Organic Chem, Pt. 13 - Equilibria
- From Gen Chem to Organic Chem, Part 14: Wrapup
01 Bonding, Structure, and Resonance
- How Concepts Build Up In Org 1 ("The Pyramid")
- Review of Atomic Orbitals for Organic Chemistry
- How Do We Know Methane (CH4) Is Tetrahedral?
- Hybrid Orbitals
- How To Determine Hybridization: A Shortcut
- Orbital Hybridization And Bond Strengths
- Sigma bonds come in six varieties: Pi bonds come in one
- A Key Skill: How to Calculate Formal Charge
- Partial Charges Give Clues About Electron Flow
- The Four Intermolecular Forces and How They Affect Boiling Points
- 3 Trends That Affect Boiling Points
- How To Use Electronegativity To Determine Electron Density (and why NOT to trust formal charge)
- Introduction to Resonance
- How To Use Curved Arrows To Interchange Resonance Forms
- Evaluating Resonance Forms (1) - The Rule of Least Charges
- Evaluating Resonance Forms (2): Applying Electronegativity
- Evaluating Resonance Forms: Factors That Stabilize Negative Charges
- Evaluating Resonance Forms (4): Positive Charges
- Exploring Resonance: Pi-Donation
- Exploring Resonance: Pi-acceptors
- In Summary: Resonance
- Drawing Resonance Structures: 3 Common Mistakes To Avoid
- How to apply electronegativity and resonance to understand reactivity
02 Acid Base Reactions
- Introduction to Acid-Base Reactions
- Walkthrough of Acid Base Reactions (1)
- Walkthrough of Acid Base Reactions (2): Basicity
- Walkthrough of Acid-Base Reactions (3) - Acidity Trends
- Five Key Factors That Influence Acidity
- Walkthrough of Acid-Base reactions (4) - pKa
- How to Use a pKa Table
- The pKa Table Is Your Friend
- A Handy Rule of Thumb for Acid-Base Reactions
- Acid Base Reactions Are Fast
- pKa Values Span 60 Orders Of Magnitude
- Acid Base Reactions: What's the Point?
03 Alkanes and Nomenclature
- Summary Sheet - Alkane Nomenclature
- Meet the (Most Important) Functional Groups
- Condensed Formulas: Deciphering What the Brackets Mean
- Hidden Hydrogens, Hidden Lone Pairs, Hidden Counterions
- Don't Be Futyl, Learn The Butyls
- Primary, Secondary, Tertiary, Quaternary In Organic Chemistry
- Branching, and Its Affect On Melting and Boiling Points
- The Many, Many Ways of Drawing Butane
- Common Mistakes: Drawing Tetrahedral Carbons
- Common Mistakes in Organic Chemistry: Pentavalent Carbon
- Table of Functional Group Priorities for Nomenclature
- Organic Chemistry IUPAC Nomenclature Demystified With A Simple Puzzle Piece Approach
04 Conformations and Cycloalkanes
- Newman Projections
- Putting the Newman into ACTION
- Introduction to Cycloalkanes (1)
- Geometric Isomers In Small Rings: Cis And Trans Cycloalkanes
- Calculation of Ring Strain In Cycloalkanes
- Cycloalkanes - Ring Strain In Cyclopropane And Cyclobutane
- Cyclohexane Conformations
- Cyclohexane Chair Conformation: An Aerial Tour
- How To Draw The Cyclohexane Chair Conformation
- The Cyclohexane Chair Flip
- The Cyclohexane Chair Flip - Energy Diagram
- Substituted Cyclohexanes - Axial vs Equatorial
- Ranking The Bulkiness Of Substituents On Cyclohexanes: "A-Values"
- The Ups and Downs of Cyclohexanes
- Cyclohexane Chair Conformation Stability: Which One Is Lower Energy?
- Fused Rings - Cis-Decalin and Trans-Decalin
- Naming Bicyclic Compounds - Fused, Bridged, and Spiro
- Bredt's Rule (And Summary of Cycloalkanes)
05 A Primer On Organic Reactions
- The Most Important Question To Ask When Learning a New Reaction
- The 4 Major Classes of Reactions in Org 1
- Learning New Reactions: How Do The Electrons Move?
- How (and why) electrons flow
- The Third Most Important Question to Ask When Learning A New Reaction
- 7 Factors that stabilize negative charge in organic chemistry
- 7 Factors That Stabilize Positive Charge in Organic Chemistry
- Common Mistakes: Formal Charges Can Mislead
- Nucleophiles and Electrophiles
- Curved Arrows (for reactions)
- Curved Arrows (2): Initial Tails and Final Heads
- Nucleophilicity vs. Basicity
- The Three Classes of Nucleophiles
- What Makes A Good Nucleophile?
- Leaving Groups Are Nucleophiles Acting In Reverse
- What makes a good leaving group?
- 3 Factors That Stabilize Carbocations
- Three Factors that Destabilize Carbocations
- What's a Transition State?
- Hammond's Postulate
- Grossman's Rule
- Draw The Ugly Version First
- Learning Organic Chemistry Reactions: A Checklist (PDF)
- Introduction to Addition Reactions
- Introduction to Elimination Reactions
- Introduction to Free Radical Substitution Reactions
- Introduction to Oxidative Cleavage Reactions
06 Free Radical Reactions
- Bond Dissociation Energies = Homolytic Cleavage
- Free Radical Reactions
- 3 Factors That Stabilize Free Radicals
- What Factors Destabilize Free Radicals?
- Bond Strengths And Radical Stability
- Free Radical Initiation: Why Is "Light" Or "Heat" Required?
- Initiation, Propagation, Termination
- Monochlorination Products Of Propane, Pentane, And Other Alkanes
- Selectivity In Free Radical Reactions
- Selectivity in Free Radical Reactions: Bromination vs. Chlorination
- Halogenation At Tiffany's
- Allylic Bromination
- Bonus Topic: Allylic Rearrangements
- In Summary: Free Radicals
- Synthesis (2) - Reactions of Alkanes
07 Stereochemistry and Chirality
- On Cats, Part 4: Enantiocats
- On Cats, Part 6: Stereocenters
- The Single Swap Rule
- Introduction to Assigning (R) and (S): The Cahn-Ingold-Prelog Rules
- Assigning Cahn-Ingold-Prelog (CIP) Priorities (2) - The Method of Dots
- Types of Isomers: Constitutional Isomers, Stereoisomers, Enantiomers, and Diastereomers
- Enantiomers vs Diastereomers vs The Same? Two Methods For Solving Problems
- Assigning R/S To Newman Projections (And Converting Newman To Line Diagrams)
- How To Determine R and S Configurations On A Fischer Projection
- The Meso Trap
- Optical Rotation, Optical Activity, and Specific Rotation
- Optical Purity and Enantiomeric Excess
- What's a Racemic Mixture?
- Chiral Allenes And Chiral Axes
08 Substitution Reactions
- Introduction to Nucleophilic Substitution Reactions
- Walkthrough of Substitution Reactions (1) - Introduction
- Two Types of Substitution Reactions
- Common Blind Spot: Intramolecular Reactions
- Why the SN2 Reaction Is Powerful
- The SN1 Mechanism
- The Conjugate Acid Is A Better Leaving Group
- Comparing the SN1 and SN2 Reactions
- Polar Protic? Polar Aprotic? Nonpolar? All About Solvents
- Steric Hindrance is Like a Fat Goalie
- The SN2 Mechanism
- The Conjugate Base is Always a Stronger Nucleophile
09 Elimination Reactions
- Elimination Reactions (1): Introduction And The Key Pattern
- Elimination Reactions (2): The Zaitsev Rule
- Elimination Reactions Are Favored By Heat
- Two Elimination Reaction Patterns
- The E1 Reaction
- The E2 Mechanism
- Comparing the E1 and E2 Reactions
- The E2 Reaction and Cyclohexane Rings
- Bulky Bases in Elimination Reactions
- Comparing the E1 and SN1 Reactions
- Elimination (E1) Reactions With Rearrangements
11 SN1/SN2/E1/E2 Decision
12 Alkene Reactions
- E and Z Notation For Alkenes (+ Cis/Trans)
- Addition Reactions: Elimination's Opposite
- Selective vs. Specific
- Regioselectivity In Alkene Addition Reactions
- Stereoselectivity In Alkene Addition Reactions: Syn vs Anti Addition
- Markovnikov Addition Of HCl To Alkenes
- Alkene Hydrohalogenation Mechanism And How It Explains Markovnikov's Rule
- Curved Arrows and Alkene Addition Reactions
- Addition Pattern #1: The "Carbocation Pathway"
- Rearrangements in Alkene Addition Reactions
- Bromination of Alkenes
- Bromination of Alkenes: The Mechanism
- Alkene Addition Pattern #2: The "Three-Membered Ring" Pathway
- Hydroboration - Oxidation of Alkenes
- Hydroboration Oxidation of Alkenes Mechanism
- Alkene Addition Pattern #3: The "Concerted" Pathway
- Bromonium Ion Formation: A (Minor) Arrow-Pushing Dilemma
- A Fourth Alkene Addition Pattern - Free Radical Addition
- Alkene Reactions: Ozonolysis
- Summary: Three Key Families Of Alkene Reaction Mechanisms
- Synthesis (4) - Alkene Reaction Map, Including Alkyl Halide Reactions
13 Alkyne Reactions
- Acetylides from Alkynes, And Substitution Reactions of Acetylides
- Partial Reduction of Alkynes To Obtain Cis or Trans Alkenes
- Hydroboration and Oxymercuration of Alkynes
- Alkyne Reaction Patterns - Hydrohalogenation - Carbocation Pathway
- Alkyne Halogenation: Bromination, Chlorination, and Iodination of Alkynes
- Alkyne Reactions - The "Concerted" Pathway
- Alkenes To Alkynes Via Halogenation And Elimination Reactions
- Alkynes Are A Blank Canvas
- Synthesis (5) - Reactions of Alkynes
14 Alcohols, Epoxides and Ethers
- Alcohols (1) - Nomenclature and Properties
- Alcohols Can Act As Acids Or Bases (And Why It Matters)
- Alcohols (3) - Acidity and Basicity
- The Williamson Ether Synthesis
- Williamson Ether Synthesis: Planning
- Ethers From Alkenes, Tertiary Alkyl Halides and Alkoxymercuration
- Alcohols To Ethers via Acid Catalysis
- Cleavage Of Ethers With Acid
- Epoxides - The Outlier Of The Ether Family
- Opening of Epoxides With Acid
- Epoxide Ring Opening With Base
- Making Alkyl Halides From Alcohols
- Tosylates And Mesylates
- PBr3 and SOCl2
- Elimination Reactions of Alcohols
- Elimination of Alcohols To Alkenes With POCl3
- Alcohol Oxidation: "Strong" and "Weak" Oxidants
- Demystifying Alcohol Oxidations
- Intramolecular Reactions of Alcohols and Ethers
- Protecting Groups For Alcohols
- Thiols And Thioethers
- Calculating the oxidation state of a carbon
- Oxidation and Reduction in Organic Chemistry
- Oxidation Ladders
- SOCl2 Mechanism For Alcohols To Alkyl Halides: SN2 versus SNi
- Alcohol Reactions Roadmap (PDF)
- What's An Organometallic?
- Formation of Grignard and Organolithium Reagents
- Organometallics Are Strong Bases
- Reactions of Grignard Reagents
- Protecting Groups In Grignard Reactions
- Grignard Practice Problems: Synthesis (1)
- Grignard Reactions And Synthesis (2)
- Organocuprates (Gilman Reagents): How They're Made
- Gilman Reagents (Organocuprates): What They're Used For
- Common Mistakes with Carbonyls: Carboxylic Acids... Are Acids!
- The Heck, Suzuki, and Olefin Metathesis Reactions (And Why They Don't Belong In Most Introductory Organic Chemistry Courses)
- Reaction Map: Reactions of Organometallics
- Degrees of Unsaturation (or IHD, Index of Hydrogen Deficiency)
- Conjugation And Color (+ How Bleach Works)
- Introduction To UV-Vis Spectroscopy
- UV-Vis Spectroscopy: Absorbance of Carbonyls
- UV-Vis Spectroscopy: Practice Questions
- Bond Vibrations, Infrared Spectroscopy, and the "Ball and Spring" Model
- Infrared Spectroscopy: A Quick Primer On Interpreting Spectra
- IR Spectroscopy: 4 Practice Problems
- Homotopic, Enantiotopic, Diastereotopic
- Liquid Gold: Pheromones In Doe Urine
- Natural Product Isolation (1) - Extraction
- Natural Product Isolation (2) - Purification Techniques, An Overview
- Structure Determination Case Study: Deer Tarsal Gland Pheromone
17 Dienes and MO Theory
- What To Expect In Organic Chemistry 2
- How Concepts Build Up In Org 2
- Are these molecules conjugated?
- Conjugation And Resonance In Organic Chemistry
- Bonding And Antibonding Pi Orbitals
- Molecular Orbitals of The Allyl Cation, Allyl Radical, and Allyl Anion
- Pi Molecular Orbitals of Butadiene
- Reactions of Dienes: 1,2 and 1,4 Addition
- Thermodynamic and Kinetic Control
- More On 1,2 and 1,4 Additions To Dienes
- s-cis and s-trans
- The Diels-Alder Reaction
- Cyclic Dienes and Dienophiles in the Diels-Alder Reaction
- Stereochemistry of the Diels-Alder Reaction
- Exo vs Endo Products In The Diels Alder: How To Tell Them Apart
- HOMO and LUMO In the Diels Alder Reaction
- Why Are Endo vs Exo Products Favored in the Diels-Alder Reaction?
- Diels-Alder Reaction: Kinetic and Thermodynamic Control
- The Retro Diels-Alder Reaction
- Regiochemistry In The Diels-Alder Reaction
19 Reactions of Aromatic Molecules
- Electrophilic Aromatic Substitution: Introduction
- Activating and Deactivating Groups In Electrophilic Aromatic Substitution
- Electrophilic Aromatic Substitution - The Mechanism
- Ortho-, Para- and Meta- Directors in Electrophilic Aromatic Substitution
- Understanding Ortho, Para, and Meta Directors
- Why are halogens ortho- para- directors?
- Disubstituted Benzenes: The Strongest Electron-Donor "Wins"
- Electrophilic Aromatic Substitutions (1) - Halogenation of Benzene
- Electrophilic Aromatic Substitutions (2) - Nitration and Sulfonation
- EAS Reactions (3) - Friedel-Crafts Acylation and Friedel-Crafts Alkylation
- Intramolecular Friedel-Crafts Reactions
- Nucleophilic Aromatic Substitution (NAS)
- Nucleophilic Aromatic Substitution (2) - The Benzyne Mechanism
- Reactions on the "Benzylic" Carbon: Bromination And Oxidation
- The Wolff-Kishner, Clemmensen, And Other Carbonyl Reductions
- More Reactions on the Aromatic Sidechain: Reduction of Nitro Groups and the Baeyer Villiger
- Aromatic Synthesis (1) - "Order Of Operations"
- Synthesis of Benzene Derivatives (2) - Polarity Reversal
- Aromatic Synthesis (3) - Sulfonyl Blocking Groups
- Synthesis (7): Reaction Map of Benzene and Related Aromatic Compounds
20 Aldehydes and Ketones
- Weird Nomenclature In Carbonyl Chemistry
- Aldehydes and Ketones: 14 Reactions With The Same Mechanism
- Wittig Reaction
- Imines and Enamines
- On Acetals and Hemiacetals
- Carbonyl Chemistry: 10 Key Concepts (Part 1)
- Carbonyls: 10 key concepts (Part 2)
- Acid Catalysis Of Carbonyl Addition Reactions: Too Much Of A Good Thing?
- Breaking Down Carbonyl Reaction Mechanisms: Anionic Nucleophiles (Part 1)
- Breaking Down Carbonyl Reaction Mechanisms: Reactions of Anionic Nucleophiles (Part 2)
21 Carboxylic Acid Derivatives
- Simplifying the reactions of carboxylic acid derivatives (part 1)
- Carbonyl Mechanisms: Neutral Nucleophiles, Part 1
- Carbonyl chemistry: Anionic versus Neutral Nucleophiles
- Proton Transfers Can Be Tricky
- Let's Talk About the [1,2] Elimination
- Carbonyl Chemistry: Learn Six Mechanisms For the Price Of One
- Summary Sheet #5 - 9 Key Mechanisms in Carbonyl Chemistry
- Summary Sheet #7 - 21 Carbonyl Mechanisms on 1 page
- How Reactions Are Like Music
- Making Music With Mechanisms (PADPED)
- The Magic Wand of Proton Transfer
- The Power of Acid Catalysis
22 Enols and Enolates
- The Amide Functional Group: Properties, Synthesis, and Nomenclature
- Basicity of Amines And pKaH
- 5 Key Basicity Trends of Amines
- The Mesomeric Effect And Aromatic Amines
- Nucleophilicity of Amines
- Alkylation of Amines (Sucks!)
- Reductive Amination
- The Gabriel Synthesis
- Some Reactions of Azides
- The Hofmann Elimination
- The Hofmann and Curtius Rearrangements
- The Cope Elimination
- Protecting Groups for Amines - Carbamates
- The Strecker Synthesis of Amino Acids
- Introduction to Peptide Synthesis
- Reactions of Diazonium Salts: Sandmeyer and Related Reactions
- D and L Notation For Sugars
- What is Mutarotation?
- Reducing Sugars
- Pyranoses and Furanoses: Ring-Chain Tautomerism In Sugars
- The Big Damn Post Of Carbohydrate-Related Chemistry Definitions
- The Haworth Projection
- Converting a Fischer Projection To A Haworth (And Vice Versa)
- Reactions of Sugars: Glycosylation and Protection
- The Ruff Degradation and Kiliani-Fischer Synthesis
25 Fun and Miscellaneous
- Organic Chemistry and the New MCAT
- A Gallery of Some Interesting Molecules From Nature
- The Organic Chemistry Behind "The Pill"
- Maybe they should call them, "Formal Wins" ?
- Planning Organic Synthesis With "Reaction Maps"
- Organic Chemistry Is Shit
- The 8 Types of Arrows In Organic Chemistry, Explained
- The Most Annoying Exceptions in Org 1 (Part 1)
- The Most Annoying Exceptions in Org 1 (Part 2)
- Screw Organic Chemistry, I'm Just Going To Write About Cats
- On Cats, Part 1: Conformations and Configurations
- On Cats, Part 2: Cat Line Diagrams
- The Marriage May Be Bad, But the Divorce Still Costs Money
- Why Do Organic Chemists Use Kilocalories?
- What Holds The Nucleus Together?
- 9 Nomenclature Conventions To Know